Chapter 3, Table 3:

The software for the first entry is not longer available at

The URL at which it can now be downloaded is:

Chapter 3, Table 3:

The QOMA software entry should have as reference (2nd column): Zhang and Kahveci, 2006 instead of Sze, Lu & Yang, 2006.

Chapter 16, page 533

The third file listed, 2000-HIV-subtype.nex should be 2000-HIV-subtype.fsa


Philippe Lemey

A Practical Approach to phylogenetic analysis and hypothesis testing

Second Edition