<![CDATA[
<body bgcolor="#FFFFFF" text="#525552" vlink="#a60000" alink="#525552" link="#ce0000" onLoad="MM_preloadImages('images/pdf_d2.png')">
<table width="750" border="0">
<tr>
<td width="91"><img src="images/log.gif" width="87" height="80"></td>
<td colspan="3" valign="middle" align="center"><a href="http://titles.cambridge.org/catalogue.asp?isbn=052180390X" target="_top" title="buy now at Cambrige University Press"><img src="images/tph2.png" alt="The Phylogenetic Handbook" width="504" height="24" border="0"></a><br>
<span class="sub_titel"> A Practical Approach to DNA and Protein
Phylogeny</span> </td>
</tr>
<tr>
<td colspan="2" rowspan="3" align="center" valign="middle"><a href="http://titles.cambridge.org/catalogue.asp?isbn=052180390X" target="_top" title="buy now at Cambrige University Press"><img src="images/cover.png" width="343" height="512" border="0"></a></td>
<td colspan="2" valign="middle" align="center">
<div class="text" align="left"> Edited by <b>Marco
Salemi</b><br>
University of California, Irvine (Formerly of Katholieke Universiteit
Leuven)<br>
and <b>Anne-Mieke Vandamme</b><br>
Rega Institute for Medical Research, Katholieke Universiteit
Leuven, Belgium</div>
</td>
</tr>
<tr>
<td colspan="2"><span class="text"> <b>The Phylogentic Handbook is a broad
introduction to the theory and practice of phylogenetic analysis.</b><br>
Download the <a href="Index.pdf" onMouseOut="MM_swapImgRestore()" onMouseOver="MM_swapImage('Table Of Contents','','images/pdf_d2.png',1)"><img name="Table Of Contents" border="0" src="images/pdf2.png" width="16" height="16"></a>
<a href="Index.pdf">Table of Contents</a> for Reading.<br>
<a href="Chapter1.pdf" onMouseOut="MM_swapImgRestore()" onMouseOver="MM_swapImage('Chapter11','','images/pdf_d2.png',1)"><img name="Chapter11" border="0" src="images/pdf2.png" width="16" height="16"></a>
<a href="Chapter1.pdf">Chapter 1</a> gives a brief overview of molecular
evolution. Chapter 2 provide a strong background in basic topics including
the use of sequence databases (Chapter 2), alignment algorithms (Chapter
3), estimation of genetic distances (Chapter 4), tree-building algorithms
based on distance as well as character-based methods (Chapter 5-7), and
phylogenetic analysis of protein sequences (Chapter 8). Additional chapters
briefly survey special topics in evolution, e.g. modeling rate heterogeneity
over site (Chapter 9), testing evolutionary models, <a href="Chapter10.pdf" onMouseOut="MM_swapImgRestore()" onMouseOver="MM_swapImage('Chapter101','','images/pdf_d2.png',1)"><img name="Chapter101" border="0" src="images/pdf2.png" width="16" height="16"></a>
<a href="Chapter10.pdf">Chapter 10</a> analyzing coding regions for positive
selection/neutral evolution (Chapter 11), modeling evolution with networks
(Chapter 12), data exploration (Chapter 13), studying recombination (Chapter
14), and estimating population genetics parameters with genealogy-based
methods (Chapter 15). Chapter 2-15 begin with a theoretical section followed
by a practical part explaining, in a step-by-step fashion, the most widely-used
phylogeny software including CLUSTAL, PHYLIP, PAUP*, DAMBE, DAMBE, MEGA,
TREE-PUZZLE, TREECON, SplitsTree, TreeView, SimPlot, and BOOTSCANNING.<br>
<br>
Download <a href="dataset.htm">the book's datasets</a> and follow the exercises
described in the practical part of each chapter. <br>
</span> </td>
</tr>
<tr>
<td colspan="2"><span class="text"> <b>Contributors</b><br>
<br>
Anne-Mieke Vandamme, Guy Bottu, Marc Van Ranst, Des Higgins, Korbinian Strimmer,
Arndt von Haeseler, Marco Salemi, David L. Swofford, Yves Van de Peer, Jack
Sullivan, Fred P. Opperdoes, David Posada, Yoshiyuli Suzuki, Takashi Gojobori,
Vincent Moulton, Xuhua Xia, Zheng Xie, Mika Salminen, Mary K. Kuhner<br>
</span></td>
</tr>
<tr>
<td colspan="4" class="text" valign="top">
<p>Authors : <a href="mailto:annemie.vandamme@uz.kuleuven.ac.be?subject=The%20Phylogenetic%20Handbook">Anne-Mieke
Vandamme</a>, Rega Institute & University Hospitals, Katholieke Universiteit
Leuven, Belgium <br>
<a href="mailto:msalemi68@hotmail.com?subject=The%20Phylogenetic%20Handbook">Marco
Salemi</a>, Department of Ecology and Evolutionary Biology, University
of California, Irvine, USA </p>
</td>
</tr>
<tr>
<td colspan="3" valign="bottom" class="text">© Cambridge University Press
<br>Layout by: Liegebeest.com ®</td>
<td width="406">
<div align="right"><a href="http://titles.cambridge.org/catalogue.asp?isbn=052180390X"><img src="images/cambridge.gif" border="0"></a></div>
</td>
</tr>
<tr>
<td width="91"> </td>
<td width="75"> </td>
<td width="160"> </td>
<td width="406"> </td>
</tr>
</table></body>]]>